| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 49 [0] | [0] 49 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 46 (1.550) | 37/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320095‑2320192 | tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:229115‑M1/1‑49 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:1372820‑M1/1‑47 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:2587514‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:857824‑M1/49‑6 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:263570‑M1/49‑6 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:886582‑M1/1‑42 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:1188184‑M1/1‑41 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:1991023‑M1/50‑11 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:1805944‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:1636732‑M1/49‑12 (MQ=255) gATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg > 1:2192454‑M1/1‑36 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcc < 1:787367‑M1/50‑17 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcc < 1:2045477‑M1/50‑17 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:553873‑M1/1‑34 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca < 1:1046424‑M1/49‑18 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:485173‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca > 1:2563211‑M1/1‑31 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcgttgccacat < 1:322172‑M1/49‑21 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:1426407‑M1/50‑22 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:1900236‑M1/1‑27 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:397114‑M1/1‑27 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:2657093‑M1/1‑27 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:800079‑M1/49‑24 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:2681716‑M1/49‑24 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:1473488‑M1/50‑26 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:771440‑M1/1‑24 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt < 1:2586102‑M1/50‑28 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:464472‑M1/49‑27 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgt < 1:1893687‑M1/50‑30 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:727032‑M1/1‑17 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:946307‑M1/1‑16 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:1982373‑M1/1‑15 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagcc < 1:530599‑M1/49‑36 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:1149721‑M1/1‑14 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:1592019‑M1/1‑11 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:2566987‑M1/1‑11 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:900671‑M1/1‑11 (MQ=255) tGGTTATATttcaccactcattgccacattccttgtgtatagccagccat > 1:1003320‑M1/1‑9 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:332030‑M1/1‑8 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:531810‑M1/50‑45 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:2108142‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:2060637‑M1/50‑45 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:283294‑M1/1‑5 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:2550709‑M1/1‑5 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:1946362‑M1/49‑46 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:476434‑M1/49‑47 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:181522‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:1422319‑M1/49‑49 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:107214‑M1/49‑49 (MQ=255) | TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320095‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |