| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 49 [0] | [0] 49 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 46 (1.550) | 37/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:229115‑M2/50‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 1:1372820‑M2/48‑49 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcacc < 1:2587514‑M2/6‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:857824‑M2/5‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:263570‑M2/5‑1 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 1:886582‑M2/43‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 1:1188184‑M2/42‑50 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACTc < 1:1991023‑M2/10‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCa < 1:1636732‑M2/11‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:1805944‑M2/39‑50 (MQ=255) gatggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg > 1:2192454‑M2/37‑50 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGcc < 1:787367‑M2/16‑1 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGcc < 1:2045477‑M2/16‑1 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:553873‑M2/35‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca < 1:1046424‑M2/17‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca < 1:485173‑M2/19‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca > 1:2563211‑M2/32‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCGTTGCCACAt < 1:322172‑M2/20‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 1:1426407‑M2/21‑1 (MQ=255) tgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc > 1:1900236‑M2/28‑50 (MQ=255) tgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc > 1:397114‑M2/28‑50 (MQ=255) tgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc > 1:2657093‑M2/28‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:800079‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:2681716‑M2/23‑1 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 1:1473488‑M2/25‑1 (MQ=255) cccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg > 1:771440‑M2/25‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 1:2586102‑M2/27‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg < 1:464472‑M2/26‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:1893687‑M2/29‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:727032‑M2/18‑50 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:946307‑M2/17‑50 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:1982373‑M2/16‑49 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:530599‑M2/35‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:1149721‑M2/15‑48 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:1592019‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:2566987‑M2/12‑49 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:900671‑M2/12‑49 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt > 1:1003320‑M2/10‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt > 1:332030‑M2/9‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:531810‑M2/44‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:2108142‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt < 1:2060637‑M2/44‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:283294‑M2/6‑50 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:2550709‑M2/6‑50 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 1:1946362‑M2/45‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 1:476434‑M2/46‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:1422319‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:107214‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg > 1:181522‑M2/2‑50 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |