New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 226599	NA (NA)	32 (1.440) +GACGAATACCATT	25/72	0.0	NA	noncoding (841/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	226613 =	NA (NA)					noncoding (855/2904 nt)	rrlH	23S ribosomal RNA

TGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGA  >  NC_000913/226565‑226650                                                 |                                      tGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCgg                                      >  1:1222374/1‑50 (MQ=38)  ggTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCggg                                     >  1:1892657/1‑50 (MQ=38)   gTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCgggg                                    >  1:1374553/1‑50 (MQ=38)   gTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCgg                                      <  1:2353470/48‑1 (MQ=38)        ccccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTa                                 >  1:2116743/1‑48 (MQ=38)         cccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTagag                              >  1:2701306/1‑50 (MQ=38)          ccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGc                             <  1:161439/50‑1 (MQ=38)            gAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCAc                           >  1:180133/1‑50 (MQ=38)             aaaGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACt                          <  1:1813322/50‑1 (MQ=38)              aaGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTg                         >  1:2142564/1‑50 (MQ=38)              aaGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTg                         <  1:1785881/50‑1 (MQ=38)                gCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGtt                       <  1:2002754/50‑1 (MQ=38)                 cTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGttt                      <  1:844934/50‑1 (MQ=38)                 cTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGttt                      <  1:2024451/50‑1 (MQ=38)                  tATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTc                     >  1:1197112/1‑50 (MQ=38)                    tttAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTc                     <  1:1437208/48‑1 (MQ=38)                    tttAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTc                     <  1:1381230/48‑1 (MQ=38)                    tttAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCgg                   <  1:1497901/50‑1 (MQ=38)                          tAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAggg             <  1:347912/50‑1 (MQ=38)                              gcCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGt          >  1:1703895/1‑49 (MQ=38)                                cTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCAt       <  1:1051201/50‑1 (MQ=38)                                  cGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATcc     >  1:894371/1‑50 (MQ=38)                                     gAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGa  >  1:1543651/1‑50 (MQ=38)                                                 |                                      TGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGA  >  NC_000913/226565‑226650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.