| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 39 [0] | [0] 39 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 35 (1.290) | 28/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:1522380‑M1/50‑1 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:115859‑M1/50‑2 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:507917‑M1/50‑2 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:2370658‑M1/1‑47 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca < 1:1246920‑M1/50‑5 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:799652‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:1318890‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2462779‑M1/1‑44 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:525842‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcacttat > 1:2366163‑M1/1‑41 (MQ=255) ttGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg > 1:1558355‑M1/1‑40 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc < 1:888283‑M1/49‑12 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc < 1:2618769‑M1/49‑12 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:103244‑M1/48‑11 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:2385874‑M1/1‑34 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1219783‑M1/1‑32 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:1805773‑M1/1‑30 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:775014‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:2354596‑M1/49‑21 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 1:624535‑M1/1‑28 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:1543071‑M1/49‑23 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:2413962‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:2332241‑M1/1‑25 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:1035462‑M1/50‑29 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:801020‑M1/50‑34 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:1679806‑M1/1‑15 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:763178‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:1092344‑M1/1‑12 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:647612‑M1/1‑11 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:2295916‑M1/1‑10 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:1869472‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:1396076‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:813554‑M1/50‑42 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1330251‑M1/1‑8 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:2263329‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccatttccgctttgcccttcac > 1:1340110‑M1/1‑7 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:2627658‑M1/1‑3 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:689273‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccac < 1:2123720‑M1/46‑46 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |