| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 39 [0] | [0] 39 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 35 (1.290) | 28/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:115859‑M2/1‑1 (MQ=255)tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:507917‑M2/1‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:2370658‑M2/48‑49 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa < 1:1246920‑M2/4‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:799652‑M2/46‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:1318890‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2462779‑M2/45‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:525842‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCACTTAt > 1:2366163‑M2/42‑50 (MQ=255) ttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg > 1:1558355‑M2/41‑50 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 1:103244‑M2/10‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 1:2618769‑M2/11‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 1:888283‑M2/11‑1 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:2385874‑M2/35‑50 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:1219783‑M2/33‑49 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:1805773‑M2/31‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:775014‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:2354596‑M2/20‑1 (MQ=255) gtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc > 1:624535‑M2/29‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:1543071‑M2/22‑1 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:2332241‑M2/26‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:2413962‑M2/26‑50 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:1035462‑M2/28‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:801020‑M2/33‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:1679806‑M2/16‑50 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt > 1:1092344‑M2/13‑50 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt > 1:763178‑M2/13‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:647612‑M2/12‑50 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:2295916‑M2/11‑49 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 1:1396076‑M2/10‑50 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 1:1869472‑M2/10‑50 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:813554‑M2/41‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:1330251‑M2/9‑50 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:2263329‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCATTTCCGCTTTGCCCTTcac > 1:1340110‑M2/8‑49 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:2627658‑M2/4‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcaccac < 1:2123720‑M2/45‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:689273‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc < 1:2488451/50‑1 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |