| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 30 [0] | [0] 30 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 27 (0.950) | 20/92 | 0.2 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846251‑2846348 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1204591‑M1/1‑50 (MQ=255) cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 1:728952‑M1/1‑49 (MQ=255) cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:1561461‑M1/50‑2 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:671122‑M1/50‑3 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:1750172‑M1/50‑3 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1972892‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1484830‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1544181‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:1946796‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:811577‑M1/50‑7 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:2059965‑M1/1‑43 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 1:548655‑M1/1‑40 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1408044‑M1/1‑38 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1190277‑M1/1‑38 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:2454119‑M1/50‑16 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:1831118‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:1728759‑M1/1‑33 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:1274987‑M1/1‑32 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:2123640‑M1/1‑29 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1610071‑M1/1‑25 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:2264744‑M1/1‑24 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:1304400‑M1/1‑24 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2314260‑M1/1‑22 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:779439‑M1/1‑20 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:829875‑M1/1‑16 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:342226‑M1/1‑9 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:2420396‑M1/1‑5 (MQ=255) ccGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:2298198‑M1/1‑4 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca < 1:1210253‑M1/50‑48 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa < 1:671735‑M1/50‑49 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846251‑2846348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |