| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 30 [0] | [0] 30 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 27 (0.950) | 20/92 | 0.2 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:728952‑M2/50‑50 (MQ=255)cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:1561461‑M2/1‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:671122‑M2/2‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:1750172‑M2/2‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1484830‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1544181‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1972892‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1946796‑M2/46‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 1:811577‑M2/6‑1 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:2059965‑M2/44‑50 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 1:548655‑M2/41‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1408044‑M2/39‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1190277‑M2/39‑50 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgag < 1:2454119‑M2/15‑1 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:1831118‑M2/34‑50 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:1728759‑M2/34‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:1274987‑M2/33‑50 (MQ=255) ttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:2123640‑M2/30‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:1610071‑M2/26‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:2264744‑M2/25‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:1304400‑M2/25‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:2314260‑M2/23‑49 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc > 1:779439‑M2/21‑50 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:829875‑M2/17‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:342226‑M2/10‑50 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:2420396‑M2/6‑50 (MQ=255) ccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:2298198‑M2/5‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa < 1:1210253‑M2/47‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa < 1:671735‑M2/48‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:2359890/50‑1 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |