| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 30 [0] | [0] 27 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 27 (0.890) | 23/98 | 0.1 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:1084663/50‑1 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:409047/1‑50 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2421258/1‑49 (MQ=255) gACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGg < 1:699651‑M1/50‑2 (MQ=255) gACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGg < 1:1540610‑M1/50‑2 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:582453‑M1/50‑4 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:247631‑M1/50‑4 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGtatgca < 1:1890714‑M1/50‑7 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgca < 1:2373631‑M1/50‑7 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc > 1:965567‑M1/1‑38 (MQ=255) gATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct > 1:2331556‑M1/1‑35 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa < 1:2497814‑M1/50‑17 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:2082540‑M1/48‑15 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:325859‑M1/50‑21 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagt < 1:2115024‑M1/50‑23 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 1:2703519‑M1/50‑27 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 1:185086‑M1/50‑28 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc < 1:119492‑M1/50‑28 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcc < 1:2612626‑M1/50‑29 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 1:1974966‑M1/1‑22 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 1:455661‑M1/50‑30 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:629949‑M1/1‑12 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:1926229‑M1/1‑10 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:1911256‑M1/1‑9 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat < 1:566615‑M1/49‑41 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:1202090‑M1/50‑43 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat > 1:821506‑M1/1‑7 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt > 1:1731698‑M1/1‑6 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:2283439‑M1/50‑48 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga > 1:578957‑M1/1‑2 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCG > NC_000913/4299578‑4299675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |