| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 30 [0] | [0] 27 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 27 (0.890) | 23/98 | 0.1 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325117‑4325213 | gacgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgg < 1:699651‑M2/1‑1 (MQ=255)gacgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgg < 1:1540610‑M2/1‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:582453‑M2/3‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt < 1:247631‑M2/3‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgTATGCa < 1:1890714‑M2/6‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:2373631‑M2/6‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc > 1:965567‑M2/39‑50 (MQ=255) gatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt > 1:2331556‑M2/36‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCt < 1:2082540‑M2/14‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaa < 1:2497814‑M2/16‑1 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:325859‑M2/20‑1 (MQ=255) gccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGt < 1:2115024‑M2/22‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:2703519‑M2/26‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:119492‑M2/27‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:185086‑M2/27‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:2612626‑M2/28‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:1974966‑M2/23‑49 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:455661‑M2/29‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:629949‑M2/13‑49 (MQ=255) caactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:1926229‑M2/11‑50 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:1911256‑M2/10‑49 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:566615‑M2/40‑1 (MQ=255) actgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatta < 1:1202090‑M2/42‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat > 1:821506‑M2/8‑50 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:1731698‑M2/7‑50 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:2283439‑M2/47‑1 (MQ=255) tgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa > 1:578957‑M2/3‑50 (MQ=255) | GCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325117‑4325213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |