| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 226599 | NA (NA) | 24 (1.200) +GACGAATACCATT |
15/72 | 0.1 | NA | noncoding (841/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 226613 = | NA (NA) | noncoding (855/2904 nt) | rrlH | 23S ribosomal RNA | |||||
GAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/226557‑226599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAC > NC_000913/226613‑226659 ||||||||||||| gtGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAAT < 1:2061659/48‑1 GATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATAC > 1:560965/1‑50 TAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCA > 1:506833/1‑50 AGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCAT > 1:774671/1‑50 GCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATT > 1:501644/1‑50 GCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCAT < 1:1940772/49‑1 CTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTG < 1:1276870/50‑1 CTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTG < 1:142778/50‑1 TTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGG < 1:902303/50‑1 TTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGG < 1:1543235/50‑1 CCCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAG > 1:1830321/1‑50 CCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGC < 1:303837/50‑1 CCGAAAGCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGC < 1:1736880/50‑1 GCTATTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTT < 1:1023677/50‑1 TTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGG < 1:1760491/50‑1 TTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCG < 1:1814359/49‑1 TTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCG < 1:1213065/49‑1 TTTAGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTC < 1:1576617/48‑1 AGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCt < 1:1803170/49‑2 AGGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCt < 1:1807762/49‑2 GGTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCta < 1:2317769/49‑3 GTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGG < 1:32590/50‑1 GTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGG < 1:263269/50‑1 GTAGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGG > 1:2015022/1‑50 AGCGCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGG > 1:2342246/1‑50 GCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGT > 1:1431093/1‑49 GCCTCGGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGT > 1:617964/1‑49 GGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCC < 1:864691/50‑1 GGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCC < 1:1110540/49‑1 GGACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATC < 1:1578566/48‑1 GACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCG < 1:1037304/50‑1 GACGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCC > 1:1429456/1‑49 CGAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGAC > 1:730773/1‑50 GAATACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACT > 1:44689/1‑50 ATACCATTGGGGGAAGAGCACTGTTTCGGCTAGGGGGTCCTCCCGACTTA > 1:933552/1‑50 TACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTAC > 1:340634/1‑50 TACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTAC < 1:100664/50‑1 ACCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTAC > 1:1156870/1‑49 CCATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACC < 1:1289403/49‑1 ATTGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAa < 1:48776/50‑2 ||||||||||||| GAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/226557‑226599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAC > NC_000913/226613‑226659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |