Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	34 [0]	[0] 34	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	34 (1.270)	28/96	0.0	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
	?	NC_000913	770613 =	0 (0.000)					intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/765158‑765207 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC  >  NC_000913/770613‑770656                                                                                                GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT                                             <  1:2019178/50‑1   GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG                                           >  1:683154/1‑50   GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG                                           <  1:1524421/50‑1      GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA                                        >  1:568265/1‑50       ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT                                       <  1:281803/50‑1       ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA                                        <  1:2197666/49‑1        TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC                                      <  1:276508/50‑1        TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC                                      <  1:2233006/50‑1              CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG                                <  1:1518398/50‑1                GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG                                >  1:2160099/1‑48                 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAA                              <  1:1713473/49‑1                   CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC                           <  1:414999/50‑1                    TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA                          >  1:1424060/1‑50                      TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA                        <  1:1876234/50‑1                       CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA                        >  1:1534248/1‑49                       CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA                        >  1:1738469/1‑49                        AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA                      >  1:554677/1‑50                        AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACAT                       <  1:1186916/49‑1                               aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG                >  1:1412741/3‑50                                 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC              >  1:2182902/1‑50                                 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC              >  1:447927/1‑50                                    TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG           <  1:109474/50‑1                                    TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC              >  1:45984/1‑47                                     AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC              >  1:573359/1‑46                                     AGTCATCAGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC              >  1:715248/1‑46                                      GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGA          <  1:630283/49‑1                                       TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT        <  1:2058437/50‑1                                       TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT        >  1:375506/1‑50                                        CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG       >  1:186179/1‑50                                        CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG       >  1:1325061/1‑50                                           CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT     >  1:1351355/1‑49                                            GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA   >  1:251027/1‑50                                            GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATGGTTG    <  1:1664962/49‑1                                              TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC  >  1:1930482/1‑49                                                                                                GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/765158‑765207 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC  >  NC_000913/770613‑770656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.