Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	765,208	Δ5,405 bp		[mngR]–mngB	[mngR], mngA, mngB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	765208	770612	5405	34 [0]	[0] 34	[mngR]–mngB	[mngR],mngA,mngB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 765207	0 (0.000)	34 (1.270)	28/96	0.0	100%	coding (669/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
	?	NC_000913	770613 =	0 (0.000)					intergenic (+2/‑845)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATA  >  NC_000913/765158‑765251                                                  |                                             gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                                             <  1:2019178‑M1/50‑2 (MQ=255)   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                           >  1:683154‑M1/1‑47 (MQ=255)   gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                                           <  1:1524421‑M1/50‑4 (MQ=255)      gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                        >  1:568265‑M1/1‑44 (MQ=255)       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                                       <  1:281803‑M1/50‑8 (MQ=255)       atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                                        <  1:2197666‑M1/49‑7 (MQ=255)        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                      <  1:276508‑M1/50‑9 (MQ=255)        ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                                      <  1:2233006‑M1/50‑9 (MQ=255)              cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                <  1:1518398‑M1/50‑15 (MQ=255)                gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg                                >  1:2160099‑M1/1‑34 (MQ=255)                 cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa                              <  1:1713473‑M1/49‑17 (MQ=255)                   cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcc                           <  1:414999‑M1/50‑20 (MQ=255)                    tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca                          >  1:1424060‑M1/1‑30 (MQ=255)                      tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                        <  1:1876234‑M1/50‑23 (MQ=255)                       cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                        >  1:1534248‑M1/1‑27 (MQ=255)                       cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca                        >  1:1738469‑M1/1‑27 (MQ=255)                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata                      >  1:554677‑M1/1‑26 (MQ=255)                        aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat                       <  1:1186916‑M1/49‑24 (MQ=255)                               aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg                >  1:1412741‑M1/3‑20 (MQ=255)                                 ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc              >  1:2182902‑M1/1‑18 (MQ=255)                                 ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc              >  1:447927‑M1/1‑18 (MQ=255)                                    taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag           <  1:109474‑M1/50‑36 (MQ=255)                                    taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc              >  1:45984‑M1/1‑15 (MQ=255)                                     aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc              >  1:573359‑M1/1‑14 (MQ=255)                                     aGTCATCAGTATTAtagcaatcaaaccgaagccacatatgcgcggc              >  1:715248‑M1/1‑14 (MQ=255)                                      gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccaga          <  1:630283‑M1/49‑37 (MQ=255)                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt        <  1:2058437‑M1/50‑39 (MQ=255)                                       tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt        >  1:375506‑M1/1‑12 (MQ=255)                                        cATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg       >  1:186179‑M1/1‑11 (MQ=255)                                        cATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg       >  1:1325061‑M1/1‑11 (MQ=255)                                           cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt     >  1:1351355‑M1/1‑8 (MQ=255)                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga   >  1:251027‑M1/1‑7 (MQ=255)                                            ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagatggttg    <  1:1664962‑M1/49‑43 (MQ=255)                                              tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgac  >  1:1930482‑M1/1‑5 (MQ=255)                                                  |                                             GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATA  >  NC_000913/765158‑765251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.