Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,286,401	Δ3,780 bp		[yejO]–[yejO]	[yejO], insH‑8, [yejO]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2286401	2290180	3780	35 [0]	[0] 36	[yejO]–[yejO]	[yejO],insH‑8,[yejO]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2286400	0 (0.000)	35 (1.280)	29/98	0.0	100%	pseudogene (2515/2525 nt)	yejO	adhesin‑like autotransporter YejO
	?	NC_000913	2290181 =	0 (0.000)					intergenic (‑1/‑319)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2286352‑2286400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA  >  NC_000913/2290181‑2290226                                                                                                 CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT                                               <  1:1352490/50‑1  AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTG                                              <  1:267660/50‑1     CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC                                           <  1:1003650/50‑1     CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC                                           <  1:854498/50‑1     CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC                                           >  1:1803299/1‑50      CGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCT                                          >  1:1260850/1‑50        TGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT                                        >  1:184947/1‑50          ACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA                                      >  1:1616869/1‑50            ACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC                                    <  1:889356/50‑1             CATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC                                   >  1:2310371/1‑50                 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG                               <  1:1466295/50‑1                 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT                                <  1:524651/49‑1                     CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT                           >  1:2324181/1‑50                       TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATT                          >  1:19337/1‑49                           TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTG                     >  1:2015678/1‑50                           TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATT                      <  1:380128/49‑1                           TATTTTCTGTTATCAGAACGTCCTGAGCGTTCATCCTATGAAATTAATT                      <  1:1491054/49‑1                            ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGC                    >  1:1531764/1‑50                            ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTG                     <  1:905607/49‑1                             TTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCT                   >  1:960985/1‑50                             TTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGC                    <  1:2158881/49‑1                                TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT                 <  1:1778119/49‑1                                 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTT                >  1:183865/1‑49                                 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTT                <  1:1144761/49‑1                                 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTT                <  1:473998/49‑1                                    TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAA             <  1:544641/49‑1                                    TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAA             <  1:1015831/49‑1                                    TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAA             <  1:52412/49‑1                                    TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAA             <  1:1229483/49‑1                                        CAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAT        >  1:741964/1‑50                                         AGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATT       >  1:290451/1‑50                                         AGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAT        <  1:2122747/49‑1                                           AACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGG     <  1:1430324/50‑1                                              GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA  >  1:845337/1‑50                                               TCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA  >  1:409605/1‑49                                                                                                 CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2286352‑2286400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA  >  NC_000913/2290181‑2290226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.