| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 35 [0] | [0] 36 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 35 (1.280) | 29/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 | cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct < 1:1352490‑M2/1‑1 (MQ=255) agaccgtgacacatcacagcctgtttattttctgttatcagaacgtccTg < 1:267660‑M2/2‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc < 1:1003650‑M2/5‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc < 1:854498‑M2/5‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc > 1:1803299‑M2/46‑50 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:1260850‑M2/45‑50 (MQ=255) tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:184947‑M2/43‑50 (MQ=255) acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa > 1:1616869‑M2/41‑50 (MQ=255) acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc < 1:889356‑M2/12‑1 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:2310371‑M2/38‑50 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt < 1:524651‑M2/16‑1 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg < 1:1466295‑M2/17‑1 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:2324181‑M2/30‑50 (MQ=255) tgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt > 1:19337‑M2/28‑49 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt < 1:380128‑M2/26‑1 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg > 1:2015678‑M2/24‑50 (MQ=255) tattttctgttatcagaacgtccTGAGCGTTCATCCTATGAaattaatt < 1:1491054‑M2/26‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg < 1:905607‑M2/27‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:1531764‑M2/23‑50 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc < 1:2158881‑M2/28‑1 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt > 1:960985‑M2/22‑50 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt < 1:1778119‑M2/31‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 1:183865‑M2/18‑49 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:1144761‑M2/32‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:473998‑M2/32‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:1015831‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:544641‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:52412‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:1229483‑M2/35‑1 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:741964‑M2/11‑50 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt > 1:290451‑M2/10‑50 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt < 1:2122747‑M2/40‑1 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 1:1430324‑M2/43‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:845337‑M2/5‑50 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:409605‑M2/4‑49 (MQ=255) tGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg > 1:1106196/1‑49 (MQ=255) | GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |