Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,466,545 Δ9,634 bp [intS]–[ypdJ] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2466545 2476178 9634 35 [0] [0] 34 [intS]–[ypdJ] [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24665440 (0.000)34 (1.240) 29/98 0.0 100% intergenic (+161/‑1) argW/intS tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
?NC_000913 2476179 = 0 (0.000)coding (86/141 nt) ypdJ CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466499‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476179‑2476223
                                                                                           
CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTA                                             >  1:1190752/1‑48
 GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                          >  1:1313269/1‑50
    TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                       >  1:1839009/1‑50
    TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                       <  1:786036/50‑1
     AAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                       >  1:1152919/1‑49
        AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA                                   <  1:2064637/50‑1
        AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                     >  1:1703427/1‑48
         AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG                                  >  1:1298512/1‑50
           TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC                                >  1:442364/1‑50
             GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT                               >  1:499545/1‑49
              ATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                             >  1:761437/1‑50
               TAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                             >  1:160116/1‑49
                   ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                        >  1:917253/1‑50
                      ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                     >  1:149373/1‑50
                      ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                     <  1:1143267/50‑1
                       TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                     >  1:666769/1‑49
                          TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                  <  1:1112350/49‑1
                           ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                >  1:1558236/1‑50
                           ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                >  1:1722862/1‑50
                           ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                >  1:1462281/1‑50
                             CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT              <  1:732971/50‑1
                              CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTG             >  1:94452/1‑50
                               ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT            >  1:1477760/1‑50
                                CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTC           <  1:177977/50‑1
                                  GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG         >  1:1615977/1‑50
                                   GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGT        >  1:461398/1‑50
                                     TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT      >  1:2158654/1‑50
                                     TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT      <  1:2083458/50‑1
                                     TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT      <  1:2080939/50‑1
                                      TTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC     >  1:1630168/1‑50
                                       TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC     <  1:1336914/49‑1
                                          ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  1:2296269/1‑49
                                          ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  1:785987/1‑49
                                          ACCCTAGAGCCATACAGCCTCACACTCGATAAGGCCTGTCAGTTTCTTA  >  1:1774757/1‑49
                                                                                           
CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466499‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476179‑2476223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.