BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,466,545	Δ9,634 bp		[intS]–[ypdJ]	15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2466545	2476178	9634	35 [0]	[0] 34	[intS]–[ypdJ]	[intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2466544	0 (0.000)	34 (1.240)	29/98	0.0	100%	intergenic (+161/‑1)	argW/intS	tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
*	?	NC_000913	2476179 =	0 (0.000)	34 (1.240)	29/98	0.0	100%	coding (86/141 nt)	ypdJ	CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

AGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476133‑2476223

cgggtaaaaagtggataaaataattttacccaccggatttttacccTa                                             >  1:1190752‑M2/47‑48 (MQ=255)

 gggtaaaaagtggataaaataattttacccaccggatttttacccTagag                                          >  1:1313269‑M2/46‑50 (MQ=255)

    taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa                                       >  1:1839009‑M2/43‑50 (MQ=255)

    taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa                                       <  1:786036‑M2/8‑1 (MQ=255)

     aaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa                                       >  1:1152919‑M2/42‑49 (MQ=255)

        aagtggataaaataattttacccaccggatttttacccTAGAGCCATa                                     >  1:1703427‑M2/39‑48 (MQ=255)

        aagtggataaaataattttacccaccggatttttacccTAGAGCCATACa                                   <  1:2064637‑M2/12‑1 (MQ=255)

         agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg                                  >  1:1298512‑M2/38‑50 (MQ=255)

           tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc                                >  1:442364‑M2/36‑50 (MQ=255)

             gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt                               >  1:499545‑M2/34‑49 (MQ=255)

              ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca                             >  1:761437‑M2/33‑50 (MQ=255)

               taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca                             >  1:160116‑M2/32‑49 (MQ=255)

                   ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc                        >  1:917253‑M2/28‑50 (MQ=255)

                      attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt                     >  1:149373‑M2/25‑50 (MQ=255)

                      attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt                     <  1:1143267‑M2/26‑1 (MQ=255)

                       ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt                     >  1:666769‑M2/24‑49 (MQ=255)

                          tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg                  <  1:1112350‑M2/29‑1 (MQ=255)

                           acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc                >  1:1558236‑M2/20‑50 (MQ=255)

                           acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc                >  1:1722862‑M2/20‑50 (MQ=255)

                           acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc                >  1:1462281‑M2/20‑50 (MQ=255)

                             ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt              <  1:732971‑M2/33‑1 (MQ=255)

                              caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg             >  1:94452‑M2/17‑50 (MQ=255)

                               accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt            >  1:1477760‑M2/16‑50 (MQ=255)

                                ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTc           <  1:177977‑M2/36‑1 (MQ=255)

                                  ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg         >  1:1615977‑M2/13‑50 (MQ=255)

                                   gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt        >  1:461398‑M2/12‑50 (MQ=255)

                                     tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt      >  1:2158654‑M2/10‑50 (MQ=255)

                                     tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt      <  1:2083458‑M2/41‑1 (MQ=255)

                                     tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt      <  1:2080939‑M2/41‑1 (MQ=255)

                                      ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc     >  1:1630168‑M2/9‑50 (MQ=255)

                                       tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc     <  1:1336914‑M2/42‑1 (MQ=255)

                                          acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa  >  1:2296269‑M2/5‑49 (MQ=255)

                                          acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa  >  1:785987‑M2/5‑49 (MQ=255)

                                          acccTAGAGCCATACAGCCTCACACTCGATAAGGCCTGTCAGTTTCTTa  >  1:1774757‑M2/5‑49 (MQ=255)

AGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA  >  NC_000913/2476133‑2476223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`