| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 19 [0] | [0] 22 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 16 (0.720) | 14/80 | 0.3 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798416‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 1:1218444/49‑1AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:1043910/1‑48 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:932517/50‑1 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG < 1:1862389/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:684853/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA > 1:837704/1‑50 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:2069902/50‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 1:2121259/50‑1 TGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:1839663/1‑50 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:1326953/1‑49 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:468604/1‑49 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCA < 1:449454/50‑1 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:1981539/1‑48 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:67446/50‑1 AAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGC < 1:1956602/50‑1 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCG > 1:2103655/1‑50 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCG > 1:188298/1‑50 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:1283621/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:1991102/1‑49 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 1:2190422/1‑50 TGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:503920/1‑47 ACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAA < 1:399790/50‑1 CGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT < 1:246196/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 1:1703177/50‑1 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 1:1034522/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:176264/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798416‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |