| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 24 [0] | [0] 24 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 24 (0.890) | 19/96 | 0.2 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618944‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCTAAGGAAGATTGAGTTA > 1:239681/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:2243370/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1090256/1‑49 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:1391503/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:1396425/1‑50 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT > 1:545516/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:704017/1‑50 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 1:2091180/1‑50 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC < 1:1772764/49‑1 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC < 1:1497324/49‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:1694547/1‑50 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:938151/1‑49 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:856088/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:1476397/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:1979675/1‑50 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:487720/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:1618171/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:1679009/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:1881643/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:1518610/50‑1 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC > 1:1644980/1‑50 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:14934/1‑49 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:1600303/1‑50 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG < 1:242491/50‑1 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618944‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |