| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 24 [0] | [0] 24 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 24 (0.890) | 19/96 | 0.2 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618944‑3619039 | cggcgTGCGGCACGGGCATTTGCAGTGCTTGCCTAAGGAAGATTGAGTta > 1:239681‑M1/1‑48 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:2243370‑M1/1‑44 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:1090256‑M1/1‑44 (MQ=255) tGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcca < 1:1391503‑M1/50‑8 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg > 1:1396425‑M1/1‑40 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt > 1:545516‑M1/1‑39 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 1:704017‑M1/1‑32 (MQ=255) ttGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtc > 1:2091180‑M1/1‑29 (MQ=255) tGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtc < 1:1772764‑M1/49‑22 (MQ=255) tGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtc < 1:1497324‑M1/49‑22 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc > 1:1694547‑M1/1‑25 (MQ=255) tGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct > 1:938151‑M1/1‑23 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcgca < 1:856088‑M1/50‑35 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:1476397‑M1/1‑16 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1979675‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:487720‑M1/1‑15 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagc < 1:1618171‑M1/50‑37 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:1679009‑M1/50‑38 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:1881643‑M1/50‑38 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagca < 1:1518610‑M1/50‑38 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc > 1:1644980‑M1/1‑11 (MQ=255) agATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:14934‑M1/1‑9 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt > 1:1600303‑M1/1‑3 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:242491‑M1/50‑49 (MQ=255) | CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618944‑3619039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |