| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 25 [0] | [0] 25 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 25 (0.910) | 22/98 | 0.1 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819735‑819823 | aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:2324961‑M1/1‑41 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:1978426‑M1/50‑13 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 1:1620029‑M1/1‑37 (MQ=255) ggTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc > 1:353886‑M1/1‑33 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa < 1:1327395‑M1/50‑19 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:168699‑M1/1‑32 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:2163396‑M1/49‑18 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc < 1:1063934‑M1/48‑17 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaat < 1:601608‑M1/50‑20 (MQ=255) aGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata > 1:858847‑M1/1‑30 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata < 1:977551‑M1/49‑21 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:2090483‑M1/1‑18 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:1897105‑M1/1‑18 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:2252238‑M1/50‑34 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:812187‑M1/1‑16 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:1938718‑M1/1‑15 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:1439267‑M1/1‑15 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1885910‑M1/1‑13 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:2116286‑M1/50‑39 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:903741‑M1/50‑39 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1665899‑M1/1‑11 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag > 1:1393825‑M1/1‑7 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:30843‑M1/1‑6 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt < 1:517945‑M1/50‑45 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg < 1:1833258‑M1/50‑49 (MQ=255) | AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819735‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |