| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 25 [0] | [0] 25 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 25 (0.910) | 22/98 | 0.1 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882712‑882800 | aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:2324961‑M2/42‑48 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:1978426‑M2/12‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg > 1:1620029‑M2/38‑50 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:353886‑M2/34‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:1063934‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:1327395‑M2/18‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:168699‑M2/33‑50 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:2163396‑M2/17‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:601608‑M2/19‑1 (MQ=255) agttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:858847‑M2/31‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta < 1:977551‑M2/20‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:2090483‑M2/19‑48 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:1897105‑M2/19‑48 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:2252238‑M2/33‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:812187‑M2/17‑49 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1938718‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1439267‑M2/16‑48 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1885910‑M2/14‑48 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:2116286‑M2/38‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:903741‑M2/38‑1 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1665899‑M2/12‑46 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg > 1:1393825‑M2/8‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:30843‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt < 1:517945‑M2/44‑1 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 1:1833258‑M2/48‑1 (MQ=255) | CGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882712‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |