| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 30 [0] | [0] 28 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 27 (1.010) | 24/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 | cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:1086938‑M1/50‑1 (MQ=255)cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:896642‑M1/50‑1 (MQ=255) cgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtca < 1:549252‑M1/50‑4 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:1294400‑M1/1‑45 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:2059098‑M1/50‑7 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga < 1:557987‑M1/50‑8 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:2206528‑M1/49‑10 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa > 1:2063321‑M1/1‑36 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:1794103‑M1/50‑20 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:810753‑M1/1‑30 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:1285583‑M1/1‑27 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:1581449‑M1/1‑26 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:1182548‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:1899321‑M1/48‑23 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:506609‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg < 1:543276‑M1/49‑25 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:882813‑M1/1‑25 (MQ=255) tgCGAGGAAAAATATCATTATGGCtcaatgatccaaataaagataatgc < 1:2006149‑M1/49‑26 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:921926‑M1/1‑22 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:2240814‑M1/50‑30 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:2149361‑M1/1‑21 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:483139‑M1/50‑33 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:1046361‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:73874‑M1/1‑16 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:939073‑M1/1‑15 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:1013834‑M1/1‑6 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:2045536‑M1/1‑4 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:1903057‑M1/1‑4 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:90885‑M1/49‑48 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcagc < 1:323495‑M1/50‑50 (MQ=255) | CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |