| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 44 (1.550) | 35/90 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > NC_000913/2867269‑2867314 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:465358/49‑1 ACGGCGTAGTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:1740343/49‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1006211/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:892101/1‑49 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:1756010/49‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:1987652/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:1876768/1‑49 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:582321/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:637730/48‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:78506/49‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:1487995/1‑49 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG < 1:437644/49‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:926434/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:33545/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:638410/1‑48 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1079983/1‑47 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 1:107648/48‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:702514/49‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:1019927/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:737310/1‑49 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:1360513/1‑48 TCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT > 1:1123549/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:160599/1‑48 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:1604836/48‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1100084/1‑48 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA < 1:458479/49‑1 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:768658/1‑49 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:1987542/1‑49 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:2255263/1‑49 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:1865555/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2292293/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:465950/49‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:115460/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:1765038/48‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:113262/1‑48 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:273301/1‑49 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:1767355/1‑49 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:1779653/49‑1 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:884182/1‑49 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCG < 1:1697536/49‑1 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCG < 1:1651630/49‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA < 1:964599/49‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA < 1:1706165/49‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:2210563/1‑49 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:753062/1‑49 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:1302019/1‑49 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:1107702/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:2097819/1‑48 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:229022/1‑48 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > NC_000913/2867269‑2867314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |