New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2846300 | 0 (0.000) | 44 (1.550) | 35/90 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGC > NC_000913/2846252‑2846346 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1006211‑M1/1‑49 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 1:892101‑M1/1‑48 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:1756010‑M1/49‑3 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 1:1987652‑M1/49‑5 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:1876768‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg < 1:582321‑M1/49‑8 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:637730‑M1/48‑7 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:1487995‑M1/1‑41 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg < 1:78506‑M1/49‑9 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg < 1:437644‑M1/49‑11 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:926434‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:33545‑M1/1‑37 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:638410‑M1/1‑36 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1079983‑M1/1‑35 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:107648‑M1/48‑16 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag < 1:702514‑M1/49‑18 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:1019927‑M1/1‑31 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:737310‑M1/1‑28 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:1360513‑M1/1‑27 (MQ=255) tcgtcgTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:1123549‑M1/1‑23 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:160599‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc < 1:1604836‑M1/48‑28 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1100084‑M1/1‑21 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca < 1:458479‑M1/49‑30 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:1987542‑M1/1‑20 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:768658‑M1/1‑20 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:2255263‑M1/1‑20 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:1865555‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2292293‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:465950‑M1/49‑32 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:115460‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:1765038‑M1/48‑31 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:113262‑M1/1‑17 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:273301‑M1/1‑15 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:1767355‑M1/1‑15 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 1:1779653‑M1/49‑37 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:884182‑M1/1‑11 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcg < 1:1697536‑M1/49‑41 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcg < 1:1651630‑M1/49‑41 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga < 1:1706165‑M1/49‑42 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga < 1:964599‑M1/49‑42 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:2210563‑M1/1‑8 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:753062‑M1/1‑7 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:1302019‑M1/1‑5 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:1107702‑M1/1‑5 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 1:2097819‑M1/1‑2 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 1:229022‑M1/1‑2 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGC > NC_000913/2846252‑2846346 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |