| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 44 [0] | [0] 43 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 41 (1.410) +GA |
35/92 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > NC_000913/3136382‑3136427 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:1626171/49‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:1200175/49‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:266928/49‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:1038846/49‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:1485546/1‑49 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:1557689/1‑49 TCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:814548/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:1839725/47‑1 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT > 1:1566361/1‑49 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:450964/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:1602731/48‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:152712/47‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:30105/46‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:1754035/49‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:2295770/49‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1131867/1‑48 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:650615/1‑48 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:239140/1‑49 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:2155276/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:1235168/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:1766880/48‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:2163004/47‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:1040444/49‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:319058/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:2017760/48‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:79266/48‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:1409848/49‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:1775948/1‑48 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:2213571/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1844267/48‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1432650/48‑1 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:318513/48‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:657244/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:1974274/49‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT < 1:920364/48‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:2099799/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:1559003/49‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:35457/49‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:337282/49‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:92083/1‑47 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:837298/49‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:2076178/49‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:1342453/1‑48 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:1722528/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:1236487/48‑1 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > NC_000913/3136382‑3136427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |