| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 44 [0] | [0] 43 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 41 (1.410) +GA |
35/92 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136335‑3136430 | cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:1038846‑M2/2‑1 (MQ=255)cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc > 1:1485546‑M2/48‑49 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:1557689‑M2/47‑49 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:814548‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:1839725‑M2/3‑1 (MQ=255) cagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt > 1:1566361‑M2/43‑49 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:30105‑M2/5‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:152712‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:450964‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:1602731‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:1754035‑M2/9‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:2295770‑M2/9‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:650615‑M2/39‑48 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:1131867‑M2/39‑48 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:239140‑M2/37‑49 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:2163004‑M2/16‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:1766880‑M2/17‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:2155276‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:1235168‑M2/18‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:1040444‑M2/21‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:79266‑M2/22‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:2017760‑M2/22‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:319058‑M2/27‑49 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:1409848‑M2/24‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:1775948‑M2/26‑48 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:1844267‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:1432650‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:2213571‑M2/23‑49 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:318513‑M2/27‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:1974274‑M2/31‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:657244‑M2/31‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:920364‑M2/30‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:2099799‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:1559003‑M2/33‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:35457‑M2/34‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:92083‑M2/15‑47 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:337282‑M2/35‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:837298‑M2/39‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:2076178‑M2/43‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:1342453‑M2/6‑48 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 1:1722528‑M2/45‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:1236487‑M2/46‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:1794155/49‑1 (MQ=255) | CTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136335‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |