| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 389,898 | Δ9,908 bp | yaiT–[yaiZ] | yaiT, insF‑2, insE‑2, yaiT, iprA, ampH, sbmA, yaiW, yaiY, [yaiZ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 389898 | 399805 | 9908 | 35 [0] | [0] 33 | yaiT–[yaiZ] | yaiT,insF‑2,insE‑2,yaiT,iprA,ampH,sbmA,yaiW,yaiY,[yaiZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 389897 | 0 (0.000) | 30 (0.990) | 24/96 | 0.1 | 100% | intergenic (‑170/‑354) | hemB/yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| ? | NC_000913 | 399806 = | 0 (0.000) | intergenic (+1/+23) | yaiZ/ddlA | DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A | |||||
GTTGATTATTCGTCGTCGCGATGAAGAAACTGAAAACGCCCAATAAGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGTTAT > NC_000913/399760‑399854 | tagaaacagcaataattttatattcactgaaaatatttttaatcttGaa > 1:2211955‑M2/47‑49 (MQ=255) gaaacagcaataattttatattcactgaaaatatttttaatcttGAata > 1:686942‑M2/45‑49 (MQ=255) gaaacagcaataattttatattcactgaaaatatttttaatcttGAat < 1:320449‑M2/4‑1 (MQ=255) acagcaataattttatattcactgaaaatatttttaatcttGAAtatta < 1:1872481‑M2/8‑1 (MQ=255) acagcaataattttatattcactgaaaatatttttaatcttGAAtatta < 1:1048375‑M2/8‑1 (MQ=255) acagcaataattttatattcactgaaaatatttttaatcttGAAtatta < 1:2188292‑M2/8‑1 (MQ=255) agcaataattttatattcactgaaaatatttttaatcttGAATATTATc > 1:1370158‑M2/40‑49 (MQ=255) gcaataattttatattcactgaaaatatttttaatcttGAATATTATCg > 1:994724‑M2/39‑49 (MQ=255) gcaataattttatattcactgaaaatatttttaatcttGAATATTATCg < 1:1703568‑M2/11‑1 (MQ=255) gcaataattttatattcactgaaaatatttttaatcttGAATATTATCg < 1:2038070‑M2/11‑1 (MQ=255) ttttatattcactgaaaatatttttaatcttGAATATTATCGGGCGTTa < 1:1233893‑M2/18‑1 (MQ=255) tttatattcactgaaaatatttttaatcttGAATATTATCGGGCGTTa > 1:2232624‑M2/31‑48 (MQ=255) tttatattcactgaaaatatttttaatcttGAATATTATCGGGCGTTa > 1:886144‑M2/31‑48 (MQ=255) ttatattcactgaaaatatttttaatcttGAATATTATCGGGCGTTaa < 1:950334‑M2/19‑1 (MQ=255) tatattcactgaaaatatttttaatcttGAATATTATCGGGCGTTaaaa > 1:420382‑M2/29‑49 (MQ=255) tattcactgaaaatatttttaatcttGAATATTATCGGGCGTTAAAata < 1:485005‑M2/23‑1 (MQ=255) tattcactgaaaatatttttaatcttGAATATTATCGGGCGTTAAAata > 1:434343‑M2/27‑49 (MQ=255) tattcactgaaaatatttttaatcttGAATATTATCGGGCGTTAAAat < 1:695642‑M2/22‑1 (MQ=255) tgaaaatatttttaatcttGAATATTATCGGGCGTTAAAATATTACAtt > 1:1891572‑M2/20‑49 (MQ=255) tgaaaatatttttaatcttGAATATTATCGGGCGTTAAAATATTACAtt > 1:1693258‑M2/20‑49 (MQ=255) aaaatatttttaatcttGAATATTATCGGGCGTTAAAATATTACATtg < 1:2306003‑M2/31‑1 (MQ=255) aatatttttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTgg < 1:1054895‑M2/34‑1 (MQ=255) aatatttttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTgg < 1:389487‑M2/34‑1 (MQ=255) tatttttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTGGtt < 1:2269460‑M2/36‑1 (MQ=255) atttttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTGGttt > 1:262503‑M2/13‑49 (MQ=255) ttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCaa > 1:2188742‑M2/9‑49 (MQ=255) ttaatcttGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCa < 1:2224553‑M2/40‑1 (MQ=255) atcttGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGc < 1:446488‑M2/44‑1 (MQ=255) atcttGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGc > 1:642694‑M2/6‑49 (MQ=255) cttGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGt > 1:1958028‑M2/4‑49 (MQ=255) gAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGTTa < 1:1211425/48‑1 (MQ=255) gAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGTTAt > 1:1749042/1‑49 (MQ=255) gAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGTTAt > 1:812554/1‑49 (MQ=255) | GTTGATTATTCGTCGTCGCGATGAAGAAACTGAAAACGCCCAATAAGAATATTATCGGGCGTTAAAATATTACATTGTGGTTTTCAATGCGTTAT > NC_000913/399760‑399854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |