Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 332,366 Δ44,951 bp pdeL–yaiL 39 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 332366 377316 44951 42 [0] [0] 42 pdeL–yaiL pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3323650 (0.000)42 (1.130) 35/96 0.0 100% intergenic (+489/‑6) yahV/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 377317 = NA (NA)intergenic (+6/+218) yaiL/frmB DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332322‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC  >  NC_000913/377317‑377363
                                                                                           
GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                              >  1:1193735/1‑47
 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                           <  1:2866869/49‑1
 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                           >  1:2270274/1‑49
 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                           >  1:1043157/1‑49
  CAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                                          <  1:926442/49‑1
   AGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC                                         <  1:489476/49‑1
      TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTG                                      <  1:1118563/49‑1
       AATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                                     >  1:1617097/1‑49
         TCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGC                                   <  1:1790443/49‑1
               ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                             <  1:531771/49‑1
               ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT                               <  1:2075493/47‑1
               ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT                               <  1:1976683/47‑1
                  CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                          <  1:1141419/49‑1
                  CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                          <  1:126738/49‑1
                  CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT                           <  1:543347/48‑1
                  CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT                           <  1:1483069/48‑1
                     AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG                       >  1:380358/1‑49
                     AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT                        <  1:1716983/48‑1
                     AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGA                         <  1:515618/47‑1
                      ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                      <  1:2666071/49‑1
                        AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGA                    <  1:1837140/49‑1
                         GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC                   <  1:2569448/49‑1
                          CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG                  >  1:987625/1‑49
                           GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                 >  1:2609686/1‑49
                           GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                 >  1:18475/1‑49
                           GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                 >  1:1682977/1‑49
                            ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT                <  1:972983/49‑1
                            ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                 >  1:226459/1‑48
                            ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                 >  1:737409/1‑48
                             TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA               >  1:1475574/1‑49
                               AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG             <  1:502091/49‑1
                                AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC            <  1:1906308/49‑1
                                AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC            >  1:487016/1‑49
                                 AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCG           >  1:2024852/1‑49
                                  GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGC          >  1:1983477/1‑49
                                      AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT      <  1:1797375/49‑1
                                      AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC       <  1:1637438/48‑1
                                       AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT      >  1:943613/1‑48
                                        GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTA    <  1:1681866/49‑1
                                        GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTA    >  1:2330782/1‑49
                                         GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT   <  1:45809/49‑1
                                          TGGATAAGTCGTGCGCAGATGCCTGATGTGACGCTATGCGCGTCTTATC  <  1:206753/49‑1
                                                                                           
GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332322‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC  >  NC_000913/377317‑377363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.