| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 42 [0] | [0] 42 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 42 (1.130) | 35/96 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGT > NC_000913/332322‑332412 | gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:1193735‑M1/1‑44 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 1:2866869‑M1/49‑7 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:2270274‑M1/1‑43 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:1043157‑M1/1‑43 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:926442‑M1/49‑8 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:489476‑M1/49‑9 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:1118563‑M1/49‑12 (MQ=255) aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:1617097‑M1/1‑37 (MQ=255) tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgc < 1:1790443‑M1/49‑15 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc < 1:531771‑M1/49‑21 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:2075493‑M1/47‑19 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:1976683‑M1/47‑19 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:1141419‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:126738‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:543347‑M1/48‑23 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:1483069‑M1/48‑23 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg > 1:380358‑M1/1‑23 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:1716983‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:515618‑M1/47‑25 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:2666071‑M1/49‑28 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga < 1:1837140‑M1/49‑30 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:2569448‑M1/49‑31 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg > 1:987625‑M1/1‑18 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:2609686‑M1/1‑17 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:18475‑M1/1‑17 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:1682977‑M1/1‑17 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:972983‑M1/49‑34 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:226459‑M1/1‑16 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:737409‑M1/1‑16 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:1475574‑M1/1‑15 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 1:502091‑M1/49‑37 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:1906308‑M1/49‑38 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:487016‑M1/1‑12 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:2024852‑M1/1‑11 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc > 1:1983477‑M1/1‑10 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct < 1:1797375‑M1/49‑44 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 1:1637438‑M1/48‑43 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:943613‑M1/1‑5 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:1681866‑M1/49‑46 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 1:2330782‑M1/1‑4 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat < 1:45809‑M1/49‑47 (MQ=255) tGgataagtcgtgcgcagatgcctgatgtgacgctatgcgcgtcttatc < 1:206753‑M1/49‑48 (MQ=255) | GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGT > NC_000913/332322‑332412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |