| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 26 [1] | [0] 26 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.030) | 25 (0.680) | 19/96 | 0.4 | 98.0% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997066‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTC > 1:2045954/1‑49 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:100890/48‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:130777/48‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT < 1:2031520/49‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGTTCCGT > 1:447242/1‑48 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:97744/49‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:2041983/49‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA > 1:834090/1‑47 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:1224542/49‑1 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:2410159/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT < 1:986454/49‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:391405/48‑1 GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:2480730/1‑47 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:2200547/49‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:262049/1‑49 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:1539744/1‑48 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:1440504/1‑48 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:1012655/1‑48 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA < 1:813767/49‑1 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:2610603/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:2698254/1‑48 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT > 1:782529/1‑48 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT > 1:1330469/1‑48 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:2204270/49‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:863449/49‑1 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997066‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |