| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 26 [1] | [0] 26 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.030) | 25 (0.680) | 19/96 | 0.4 | 98.0% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023633‑2023727 | tgcagcagaaacttctcgaggaactggcgggggcgaggctgctcggTTc > 1:2045954‑M2/47‑49 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTc < 1:130777‑M2/3‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTc < 1:100890‑M2/3‑1 (MQ=255) agcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGt < 1:2031520‑M2/6‑1 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgagggtgctcggTTCCGt > 1:447242‑M2/43‑48 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa < 1:97744‑M2/7‑1 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa < 1:2041983‑M2/7‑1 (MQ=255) agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTa > 1:834090‑M2/41‑47 (MQ=255) acttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGttt < 1:1224542‑M2/13‑1 (MQ=255) ctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATc < 1:2410159‑M2/16‑1 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg < 1:391405‑M2/19‑1 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt < 1:986454‑M2/20‑1 (MQ=255) ggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 1:2480730‑M2/22‑47 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc < 1:2200547‑M2/36‑1 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 1:262049‑M2/13‑49 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:1539744‑M2/11‑48 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:1440504‑M2/11‑48 (MQ=255) ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:1012655‑M2/11‑48 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaa < 1:813767‑M2/40‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:2610603‑M2/41‑1 (MQ=255) ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 1:2698254‑M2/6‑48 (MQ=255) tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat > 1:782529‑M2/5‑48 (MQ=255) tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaat > 1:1330469‑M2/5‑48 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:2204270‑M2/48‑1 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:863449‑M2/48‑1 (MQ=255) ttCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc > 1:373941/1‑49 (MQ=255) | TTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023633‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |