| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 48 [0] | [0] 46 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 46 (1.240) | 34/96 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466499‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAG < 1:415026/49‑1 GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA < 1:898221/49‑1 GTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC < 1:1723443/49‑1 GTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC > 1:1389061/1‑49 AAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:1957174/1‑49 AAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:1594349/1‑49 AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA > 1:1776176/1‑48 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:210270/1‑49 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:1523821/1‑49 AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:153122/1‑49 AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA > 1:1245117/1‑48 AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA < 1:1490834/49‑1 TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC > 1:90605/1‑49 TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC > 1:806767/1‑49 GGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC > 1:2599129/1‑49 TAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA > 1:2313010/1‑49 TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC < 1:1713219/49‑1 TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC > 1:1921400/1‑49 ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA > 1:1818806/1‑49 ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA > 1:2793608/1‑49 ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCG < 1:2168364/48‑1 TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:1252468/1‑49 TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:34743/1‑48 TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT > 1:2306376/1‑47 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG > 1:2560831/1‑49 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG < 1:71377/48‑1 ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG < 1:2213978/48‑1 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:1797546/1‑49 CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC > 1:598702/1‑49 ctACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:1359575/3‑49 CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:1359576/1‑49 CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC > 1:983069/1‑49 CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT > 1:1046697/1‑49 CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT > 1:1268616/1‑49 GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG > 1:1924675/1‑49 TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT > 1:422543/1‑49 TTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT > 1:2314032/1‑49 TTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT > 1:1325304/1‑49 TACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT < 1:1760462/48‑1 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA < 1:2819869/49‑1 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA > 1:2617216/1‑48 CCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTA > 1:1865664/1‑48 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAA < 1:1924427/49‑1 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA > 1:2193126/1‑48 CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAA > 1:983698/1‑48 CTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA < 1:331300/49‑1 CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2466499‑2466544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476179‑2476226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |