| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 48 [0] | [0] 46 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 46 (1.240) | 34/96 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
AGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476133‑2476226 | cgggtaaaaagtggataaaataattttacccaccggatttttacccTag < 1:415026‑M2/3‑1 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:898221‑M2/4‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:1723443‑M2/6‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:1389061‑M2/44‑49 (MQ=255) aaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:1957174‑M2/42‑49 (MQ=255) aaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:1594349‑M2/42‑49 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:1776176‑M2/41‑48 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:210270‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:1523821‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:153122‑M2/40‑49 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:1245117‑M2/39‑48 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACa < 1:1490834‑M2/12‑1 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:90605‑M2/36‑49 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:806767‑M2/36‑49 (MQ=255) ggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:2599129‑M2/35‑49 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:2313010‑M2/32‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:1713219‑M2/23‑1 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:1921400‑M2/27‑49 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCg < 1:2168364‑M2/24‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:1818806‑M2/25‑49 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:2793608‑M2/25‑49 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:1252468‑M2/24‑49 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:34743‑M2/23‑48 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:2306376‑M2/22‑47 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:2560831‑M2/20‑49 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:71377‑M2/29‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:2213978‑M2/29‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:1797546‑M2/19‑49 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:598702‑M2/19‑49 (MQ=255) ctaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:1359575‑M2/18‑49 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:1359576‑M2/18‑49 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:983069‑M2/18‑49 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:1046697‑M2/17‑49 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:1268616‑M2/15‑49 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:1924675‑M2/12‑49 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:422543‑M2/10‑49 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:2314032‑M2/9‑49 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:1325304‑M2/9‑49 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt < 1:1760462‑M2/43‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:2819869‑M2/46‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:2617216‑M2/4‑48 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:1865664‑M2/4‑48 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:1924427‑M2/47‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 1:2193126‑M2/3‑48 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 1:983698‑M2/3‑48 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:331300‑M2/48‑1 (MQ=255) | AGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA > NC_000913/2476133‑2476226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |