| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 56 (1.620) | 42/90 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > NC_000913/2867269‑2867315 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1046812/1‑49AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:2248376/49‑1AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1409444/1‑49AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:40996/1‑49 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:210525/1‑49 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:79837/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:2853826/1‑49 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:2454396/1‑49 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:1252041/1‑49 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:1666067/49‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC < 1:2553527/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:645023/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:2049264/1‑49 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:1338036/1‑49 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:397000/48‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:1551293/49‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:387740/1‑49 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:2556590/1‑49 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC < 1:1953539/48‑1 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC < 1:2272313/48‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2626226/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2445427/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCG < 1:1788994/49‑1 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:686447/1‑48 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1929565/1‑48 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1122175/1‑47 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:536947/1‑47 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA > 1:2726742/1‑47 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:2220825/1‑49 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:1415208/49‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:923405/1‑49 TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:1632777/1‑48 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:674768/1‑49 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1413386/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2672501/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2301759/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1201318/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCC < 1:1791414/49‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:1786023/48‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:2641073/1‑48 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:1306955/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:2457289/49‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2659175/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:95530/48‑1 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2291702/1‑47 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:558883/1‑47 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:770061/1‑47 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:1583181/1‑49 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:2113775/49‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:2296466/49‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:304901/49‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:1532097/49‑1 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:460977/1‑49 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:1200832/1‑49 AACAGCACCGATCACCCGTCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:2138827/1‑49 ACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:828566/1‑49 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:1783040/1‑48 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG > 1:2602369/1‑49 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 1:2101387/49‑1 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC < 1:977645/49‑1 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:412076/1‑49 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:1993445/49‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 1:188005/1‑48 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:1559740/1‑48 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > NC_000913/2867269‑2867315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |