| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 56 (1.620) | 42/90 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCA > NC_000913/2846252‑2846347 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:79837‑M1/1‑49 (MQ=255)cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:210525‑M1/1‑49 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 1:2853826‑M1/1‑48 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:2454396‑M1/1‑46 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:1252041‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 1:1666067‑M1/49‑5 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc < 1:2553527‑M1/49‑6 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:2049264‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg < 1:645023‑M1/49‑8 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:1338036‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:397000‑M1/48‑7 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:2556590‑M1/1‑41 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg < 1:1551293‑M1/49‑9 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:387740‑M1/1‑41 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc < 1:2272313‑M1/48‑10 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc < 1:1953539‑M1/48‑10 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2626226‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2445427‑M1/1‑37 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcg < 1:1788994‑M1/49‑14 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:686447‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1929565‑M1/1‑36 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:536947‑M1/1‑35 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1122175‑M1/1‑35 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 1:2726742‑M1/1‑33 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag < 1:1415208‑M1/49‑18 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:2220825‑M1/1‑32 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:923405‑M1/1‑30 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:1632777‑M1/1‑29 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:674768‑M1/1‑28 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1413386‑M1/1‑24 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1201318‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2672501‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2301759‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcc < 1:1791414‑M1/49‑29 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc < 1:1786023‑M1/48‑28 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2641073‑M1/1‑21 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:1306955‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:2457289‑M1/49‑32 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2659175‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:95530‑M1/48‑31 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:770061‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2291702‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:558883‑M1/1‑16 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:1583181‑M1/1‑15 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:2113775‑M1/49‑36 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:1532097‑M1/49‑38 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:2296466‑M1/49‑38 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:304901‑M1/49‑38 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:1200832‑M1/1‑11 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:460977‑M1/1‑11 (MQ=255) aaCAGCACCGAtcacccgtcggcgagaggcgacatctccacgcagtgcg > 1:2138827‑M1/1‑11 (MQ=255) aCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:828566‑M1/1‑10 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:1783040‑M1/1‑9 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg > 1:2602369‑M1/1‑6 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg < 1:2101387‑M1/49‑44 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:412076‑M1/1‑5 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc < 1:977645‑M1/49‑45 (MQ=255) ccGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 1:1993445‑M1/49‑46 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:188005‑M1/1‑3 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca > 1:1559740‑M1/1‑1 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCA > NC_000913/2846252‑2846347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |