| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 45 [0] | [0] 46 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 45 (1.240) | 33/94 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTG > NC_000913/1962520‑1962612 | cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:2007766‑M1/1‑46 (MQ=255)cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:1574973‑M1/1‑46 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:1036258‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2055072‑M1/1‑41 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:888524‑M1/49‑10 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2557724‑M1/49‑11 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:2569695‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag < 1:502236‑M1/49‑12 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:2429256‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:92742‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:1566259‑M1/1‑38 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:2412754‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:1854444‑M1/48‑15 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:2587294‑M1/48‑17 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:1799026‑M1/48‑17 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:470200‑M1/1‑31 (MQ=255) tGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:657173‑M1/1‑29 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:1736378‑M1/47‑21 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:2506210‑M1/49‑24 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:1702803‑M1/1‑26 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:764284‑M1/1‑26 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:2013152‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:829997‑M1/1‑20 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:1492177‑M1/49‑31 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:1186933‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:65469‑M1/48‑30 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagga < 1:109290‑M1/49‑32 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:2324578‑M1/49‑34 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:2528167‑M1/49‑37 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:2609388‑M1/48‑36 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:1168811‑M1/1‑12 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:1068599‑M1/1‑11 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:753136‑M1/1‑11 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:135696‑M1/1‑8 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg < 1:954979‑M1/49‑44 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:2514706‑M1/1‑5 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:196036‑M1/1‑5 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:1740925‑M1/49‑45 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:304310‑M1/1‑4 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:191152‑M1/1‑4 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 1:2530281‑M1/1‑3 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:1305053‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:1281116‑M1/49‑48 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:1212404‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:1048510‑M1/49‑48 (MQ=255) | CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTG > NC_000913/1962520‑1962612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |