| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 45 [0] | [0] 46 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 45 (1.240) | 33/94 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
GTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979284‑1979378 | catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:2007766‑M2/47‑49 (MQ=255)catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1574973‑M2/47‑49 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctacg < 1:1036258‑M2/7‑1 (MQ=255) agcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:2055072‑M2/42‑49 (MQ=255) gcctttttcactgagttattaaacatactcgcgagcgcgtcgctacgct < 1:888524‑M2/9‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:2557724‑M2/10‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:2569695‑M2/39‑49 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag < 1:502236‑M2/11‑1 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:2429256‑M2/39‑49 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:92742‑M2/39‑49 (MQ=255) ctttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:1566259‑M2/39‑49 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagca < 1:2412754‑M2/13‑1 (MQ=255) ttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaa < 1:1854444‑M2/14‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:2587294‑M2/16‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:1799026‑M2/16‑1 (MQ=255) actgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagca > 1:470200‑M2/32‑48 (MQ=255) tgagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaa > 1:657173‑M2/30‑48 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaa < 1:1736378‑M2/20‑1 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:1702803‑M2/27‑48 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:764284‑M2/27‑48 (MQ=255) gttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATg < 1:2506210‑M2/23‑1 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:2013152‑M2/21‑49 (MQ=255) aaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:829997‑M2/21‑49 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAgg < 1:1492177‑M2/30‑1 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1186933‑M2/20‑48 (MQ=255) aacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:65469‑M2/29‑1 (MQ=255) acatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGa < 1:109290‑M2/31‑1 (MQ=255) atactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:2324578‑M2/33‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat < 1:2528167‑M2/36‑1 (MQ=255) ctcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa < 1:2609388‑M2/35‑1 (MQ=255) tcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:1168811‑M2/13‑49 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:753136‑M2/12‑48 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:1068599‑M2/12‑48 (MQ=255) gagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa > 1:135696‑M2/9‑49 (MQ=255) gcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:954979‑M2/43‑1 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:2514706‑M2/6‑49 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:196036‑M2/6‑49 (MQ=255) cgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:1740925‑M2/44‑1 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:304310‑M2/5‑48 (MQ=255) gcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:191152‑M2/5‑48 (MQ=255) cgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa > 1:2530281‑M2/4‑49 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:1305053‑M2/3‑49 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:1281116‑M2/47‑1 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt > 1:1212404‑M2/3‑49 (MQ=255) gtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:1048510‑M2/47‑1 (MQ=255) cgctacgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt > 1:466101/1‑49 (MQ=255) | GTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979284‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |