| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 58 [0] | [0] 59 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 58 (1.600) | 41/94 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCC > NC_000913/2756112‑2756206 | gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:1545440‑M1/1‑47 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:1123471‑M1/49‑4 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:489601‑M1/1‑45 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:1428397‑M1/49‑6 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:2728860‑M1/49‑7 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:2837932‑M1/49‑7 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:96056‑M1/49‑9 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:1166318‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:1574137‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:315216‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:2428496‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:679087‑M1/1‑40 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 1:319417‑M1/47‑10 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:398348‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa < 1:892805‑M1/46‑11 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:2714389‑M1/1‑34 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:1747073‑M1/48‑15 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:918422‑M1/48‑15 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:2440648‑M1/48‑15 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:1633945‑M1/48‑15 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:1264129‑M1/48‑15 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:528186‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:1906189‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:901551‑M1/1‑33 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2611210‑M1/1‑31 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:2032052‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:2073546‑M1/49‑22 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 1:2568447‑M1/49‑23 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:1520463‑M1/49‑28 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa > 1:965704‑M1/1‑21 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:1681240‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:2789126‑M1/47‑29 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:947425‑M1/49‑32 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:1638807‑M1/49‑32 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:825162‑M1/49‑32 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:2408175‑M1/49‑34 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:2239337‑M1/49‑34 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatggagagatgaaaatta > 1:930540‑M1/1‑16 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:1123825‑M1/49‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:89097‑M1/1‑15 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:2734477‑M1/49‑36 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:2670003‑M1/1‑14 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgaca < 1:1846650‑M1/49‑39 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:2154479‑M1/49‑40 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:1717512‑M1/49‑40 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:2351603‑M1/49‑41 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:455554‑M1/49‑42 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt > 1:481101‑M1/1‑8 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:304936‑M1/49‑43 (MQ=255) cccccacctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:2460360‑M1/48‑44 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:2579694‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 1:859774‑M1/48‑45 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 1:702873‑M1/48‑45 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:467951‑M1/49‑47 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:666566‑M1/1‑3 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:474912‑M1/49‑47 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat > 1:580326‑M1/1‑2 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:1155346‑M1/49‑48 (MQ=255) | GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCC > NC_000913/2756112‑2756206 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |