| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 58 [0] | [0] 59 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 58 (1.600) | 41/94 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
GAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791204‑2791299 | gaaaagctctattgtttacgttgggctaaacgcagggagactccccacc > 1:1545440‑M2/48‑49 (MQ=255) aaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 1:1123471‑M2/3‑1 (MQ=255) aaagctctattgtttacgttgggctaaacgcagggagactccccaCCtt > 1:489601‑M2/46‑49 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCttt < 1:1428397‑M2/5‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg < 1:2837932‑M2/6‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg < 1:2728860‑M2/6‑1 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa < 1:96056‑M2/8‑1 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:2428496‑M2/41‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:1574137‑M2/41‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:1166318‑M2/41‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:315216‑M2/41‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:679087‑M2/41‑48 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaa < 1:319417‑M2/9‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa < 1:892805‑M2/10‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 1:398348‑M2/13‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:1747073‑M2/14‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:2440648‑M2/14‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:918422‑M2/14‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:1633945‑M2/14‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:1264129‑M2/14‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGa > 1:2714389‑M2/35‑49 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt > 1:901551‑M2/34‑49 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:528186‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:1906189‑M2/16‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg > 1:2611210‑M2/32‑48 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAg < 1:2032052‑M2/20‑1 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 1:2073546‑M2/21‑1 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCg < 1:2568447‑M2/22‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 1:1520463‑M2/27‑1 (MQ=255) taaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa > 1:965704‑M2/22‑49 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 1:2789126‑M2/28‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt < 1:1681240‑M2/30‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:1638807‑M2/31‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:825162‑M2/31‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:947425‑M2/31‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa < 1:2239337‑M2/33‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa < 1:2408175‑M2/33‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGGAGAGATGAAAATTa > 1:930540‑M2/17‑48 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 1:89097‑M2/16‑49 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc < 1:1123825‑M2/34‑1 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 1:2670003‑M2/15‑48 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 1:2734477‑M2/35‑1 (MQ=255) gagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACa < 1:1846650‑M2/38‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:1717512‑M2/39‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:2154479‑M2/39‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 1:2351603‑M2/40‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt > 1:481101‑M2/9‑48 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:455554‑M2/41‑1 (MQ=255) ctccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa < 1:304936‑M2/42‑1 (MQ=255) cccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAc < 1:2460360‑M2/43‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACtt < 1:2579694‑M2/45‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt < 1:702873‑M2/44‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt < 1:859774‑M2/44‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa < 1:474912‑M2/46‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa > 1:666566‑M2/4‑49 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa < 1:467951‑M2/46‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt > 1:580326‑M2/3‑49 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 1:1155346‑M2/47‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTc < 1:2187604/49‑1 (MQ=255) | GAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791204‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |