| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 47 [0] | [0] 47 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 43 (1.210) | 33/92 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
ATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325368‑325458 | ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:702741‑M2/4‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa < 1:1160678‑M2/8‑1 (MQ=255) gaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:236850‑M2/9‑1 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATc < 1:2325396‑M2/10‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:1315464‑M2/39‑47 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCa < 1:620249‑M2/11‑1 (MQ=255) tcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:69566‑M2/35‑49 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:2239997‑M2/33‑49 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:2174053‑M2/33‑49 (MQ=255) cggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:561775‑M2/18‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt > 1:1264451‑M2/31‑49 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt > 1:854034‑M2/31‑49 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt < 1:15895‑M2/19‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:2712796‑M2/20‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:2119635‑M2/20‑1 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTtcgag < 1:1784254‑M2/23‑3 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 1:1784269‑M2/23‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:1536952‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:2566991‑M2/25‑48 (MQ=255) gctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:367569‑M2/24‑48 (MQ=255) gctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTa < 1:75624‑M2/26‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa < 1:1498687‑M2/27‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTa > 1:2499598‑M2/23‑48 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:279777‑M2/22‑49 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:1942538‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:1762866‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:2470758‑M2/29‑1 (MQ=255) gtgataccggcatcgatAGTCTGTATCAGGAATGTTAGGGGGAAATATc < 1:789074‑M2/32‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCa < 1:1485768‑M2/33‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:1316193‑M2/15‑48 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:881266‑M2/39‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:2844512‑M2/40‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:347269‑M2/40‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:561542‑M2/10‑47 (MQ=255) gcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:943895‑M2/41‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:1052679‑M2/43‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:552141‑M2/43‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:56061‑M2/43‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:2232345‑M2/44‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:403519‑M2/44‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:1392729‑M2/44‑1 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:2768778‑M2/4‑48 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:2728335‑M2/45‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt < 1:1762774‑M2/48‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:586614‑M2/2‑49 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:2138489‑M2/2‑49 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcat > 1:2039296/1‑48 (MQ=255) | ATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325368‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |