| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 47 [0] | [0] 47 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 43 (1.210) | 33/92 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263466‑263561 | ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:122114‑M1/48‑1 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc < 1:702741‑M1/47‑5 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta < 1:1160678‑M1/49‑9 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:236850‑M1/49‑10 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatc < 1:2325396‑M1/49‑11 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:620249‑M1/49‑12 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:1315464‑M1/1‑38 (MQ=255) tCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa > 1:69566‑M1/1‑34 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:2239997‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:2174053‑M1/1‑32 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:561775‑M1/49‑19 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt > 1:854034‑M1/1‑30 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt > 1:1264451‑M1/1‑30 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt < 1:15895‑M1/49‑20 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:2712796‑M1/49‑21 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:2119635‑M1/49‑21 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:1784269‑M1/49‑24 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgag < 1:1784254‑M1/49‑24 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:1536952‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:2566991‑M1/1‑24 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:75624‑M1/49‑27 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:367569‑M1/1‑23 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaa < 1:1498687‑M1/49‑28 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta > 1:2499598‑M1/1‑22 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:279777‑M1/1‑21 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:1942538‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:1762866‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:2470758‑M1/48‑30 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttagggggaaatatc < 1:789074‑M1/49‑33 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:1485768‑M1/49‑34 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:1316193‑M1/1‑14 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaa < 1:881266‑M1/49‑40 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:2844512‑M1/49‑41 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:347269‑M1/49‑41 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:561542‑M1/1‑9 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:943895‑M1/49‑42 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:1052679‑M1/49‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:552141‑M1/49‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:56061‑M1/49‑44 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:2232345‑M1/49‑45 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:1392729‑M1/49‑45 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:403519‑M1/49‑45 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:2768778‑M1/1‑3 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:2728335‑M1/48‑46 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat < 1:1762774‑M1/49‑49 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2138489‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:586614‑M1/1‑1 (MQ=255) | TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263466‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |