| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 36 [0] | [0] 36 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 36 (0.990) | 25/94 | 0.1 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
ATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > NC_000913/1652715‑1652806 | tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAg > 1:273383‑M2/48‑49 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc > 1:853940‑M2/47‑49 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcgc < 1:1746140‑M2/5‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:2364379‑M2/6‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:2643320‑M2/6‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:1965359‑M2/8‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:372440‑M2/41‑49 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg < 1:1122220‑M2/9‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:1111313‑M2/41‑49 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:1526353‑M2/33‑49 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:1632829‑M2/33‑49 (MQ=255) ttgacacacaaaagcgttgaggaacagtgaaaAGCGCAGTGCCCAGCCa > 1:1816082‑M2/33‑49 (MQ=255) tgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAt > 1:1324597‑M2/32‑49 (MQ=255) tgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAt > 1:1504243‑M2/32‑49 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATcc < 1:800063‑M2/20‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:1283950‑M2/19‑1 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:934743‑M2/28‑48 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:2031747‑M2/28‑48 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:909232‑M2/22‑1 (MQ=255) caaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa > 1:2349469‑M2/25‑49 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct < 1:2207768‑M2/27‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:2617247‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:1753805‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAGCCCGATActgct < 1:2421157‑M2/30‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc > 1:1442785‑M2/18‑49 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc > 1:290068‑M2/18‑49 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:1090978‑M2/33‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt < 1:531117‑M2/34‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:2800283‑M2/14‑48 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:214108‑M2/14‑48 (MQ=255) acagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAcc > 1:1341539‑M2/10‑48 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa > 1:288044‑M2/9‑48 (MQ=255) gtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt < 1:2821108‑M2/43‑1 (MQ=255) tgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATc < 1:2535853‑M2/44‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATcc < 1:1312165‑M2/45‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATcc < 1:1187088‑M2/45‑1 (MQ=255) | ATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > NC_000913/1652715‑1652806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |