| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,165,151 | Δ12,060 bp | yegP–gatY | 17 genes yegP, yegQ, cyaR, ogrK, yegZ, yegR, yegS, gatR, insE‑5, insF‑5, gatR, gatD, gatC, gatB, gatA, gatZ, gatY |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2165151 | 2177210 | 12060 | 40 [0] | [0] 40 | yegP–gatY | yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2165150 | 0 (0.000) | 40 (1.080) | 28/96 | 0.1 | 100% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 0 (0.000) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
TGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTT > NC_000913/2177164‑2177258 | gcatcagaaaatcgctcatactttaatcggtaaacagcacctttagaAt > 1:494243‑M2/48‑49 (MQ=255)gcatcagaaaatcgctcatactttaatcggtaaacagcacctttagaAt < 1:2479769‑M2/2‑1 (MQ=255) catcagaaaatcgctcatactttaatcggtaaacagcacctttagaATc > 1:532102‑M2/47‑49 (MQ=255) agaaaatcgctcatactttaatcggtaaacagcacctttagaATCCTGt > 1:709249‑M2/43‑49 (MQ=255) agaaaatcgctcatactttaatcggtaaacagcacctttagaATCCTGt < 1:2430041‑M2/7‑1 (MQ=255) atcgctcatactttaatcggtaaacagcacctttagaATCCTGTCgttt < 1:180333‑M2/12‑1 (MQ=255) atcgctcatactttaatcggtaaacagcacctttagaATCCTGTCgttt < 1:2065818‑M2/12‑1 (MQ=255) tcgctcatactttaatcggtaaacagcacctttagaATCCTGTCgtttg < 1:1369390‑M2/13‑1 (MQ=255) tcgctcatactttaatcggtaaacagcacctttagaATCCTGTCgtttg < 1:1752327‑M2/13‑1 (MQ=255) tcatactttaatcggtaaacagcacctttagaATCCTGTCGTTTGtttt > 1:709891‑M2/33‑49 (MQ=255) tcatactttaatcggtaaacagcacctttagaATCCTGTCGTTTGtttt > 1:2049869‑M2/33‑49 (MQ=255) atactttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTc > 1:2634844‑M2/31‑48 (MQ=255) atactttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTc > 1:1870044‑M2/31‑48 (MQ=255) tactttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGa > 1:860632‑M2/30‑49 (MQ=255) tactttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGa < 1:1092426‑M2/20‑1 (MQ=255) actttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGAt > 1:2345312‑M2/29‑49 (MQ=255) ctttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGAtt < 1:654248‑M2/22‑1 (MQ=255) ctttaatcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGAtt < 1:2022015‑M2/22‑1 (MQ=255) atcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGATTTCaaa < 1:1230001‑M2/27‑1 (MQ=255) atcggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGATTTCaa > 1:1144292‑M2/23‑48 (MQ=255) ggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAata < 1:508970‑M2/30‑1 (MQ=255) ggtaaacagcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAat < 1:763519‑M2/29‑1 (MQ=255) taaacagcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAAtata < 1:85519‑M2/32‑1 (MQ=255) cagcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATg > 1:2568736‑M2/14‑48 (MQ=255) agcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa < 1:825830‑M2/37‑1 (MQ=255) agcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa < 1:2473952‑M2/37‑1 (MQ=255) agcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGa > 1:2577889‑M2/13‑48 (MQ=255) agcacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGa > 1:1748347‑M2/13‑48 (MQ=255) cacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat < 1:1471529‑M2/39‑1 (MQ=255) cacctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat < 1:2291233‑M2/39‑1 (MQ=255) acctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAatt < 1:492801‑M2/40‑1 (MQ=255) acctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat > 1:1671347‑M2/10‑48 (MQ=255) acctttagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat > 1:1943667‑M2/10‑48 (MQ=255) tagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTAttt < 1:149957‑M2/44‑1 (MQ=255) tagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTg > 1:459445‑M2/5‑49 (MQ=255) tagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTg > 1:752154‑M2/5‑49 (MQ=255) tagaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTg > 1:2194950‑M2/5‑49 (MQ=255) gaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGtt < 1:2849869‑M2/47‑1 (MQ=255) gaATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGtt < 1:1012184‑M2/47‑1 (MQ=255) aATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttt > 1:1869282‑M2/2‑49 (MQ=255) | TGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTT > NC_000913/2177164‑2177258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |