| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 25 [0] | [0] 25 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 23 (0.880) | 18/92 | 0.2 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263466‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:279003/1‑47 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:881464/1‑49 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG < 1:67043/49‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:637674/1‑48 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:765351/49‑1 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGGATCAGGAAT > 1:1741862/1‑49 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG > 1:1488246/1‑49 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG > 1:1778021/1‑49 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:1373203/49‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:1254199/49‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:566118/49‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA < 1:1430748/49‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA < 1:206042/49‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:520216/1‑48 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:505497/49‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:1313831/1‑47 GATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG > 1:1724789/1‑49 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:143955/48‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:1279581/49‑1 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:604107/49‑1 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC < 1:648056/49‑1 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:906845/1‑49 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:1096845/1‑49 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:792248/1‑49 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA < 1:1116695/49‑1 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:1340263/49‑1 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263466‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |