| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 25 [0] | [0] 25 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 23 (0.880) | 18/92 | 0.2 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263469‑263561 | tACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc > 1:881464‑M1/1‑45 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg < 1:67043‑M1/49‑7 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:637674‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:765351‑M1/49‑12 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctggatcaggaat > 1:1741862‑M1/1‑33 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:1488246‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:1778021‑M1/1‑32 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:1373203‑M1/49‑19 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:1254199‑M1/49‑21 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:566118‑M1/49‑21 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaa < 1:206042‑M1/49‑28 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaa < 1:1430748‑M1/49‑28 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta > 1:520216‑M1/1‑22 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:505497‑M1/49‑33 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:1313831‑M1/1‑16 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:1724789‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:143955‑M1/48‑35 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:1279581‑M1/49‑37 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:604107‑M1/49‑42 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc < 1:648056‑M1/49‑43 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:906845‑M1/1‑4 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:1096845‑M1/1‑4 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:792248‑M1/1‑4 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca < 1:1116695‑M1/49‑48 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat < 1:1340263‑M1/49‑49 (MQ=255) | TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263469‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |