| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 25 [0] | [0] 27 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 24 (0.890) | 22/94 | 0.1 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687811‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT > NC_000913/689045‑689087 TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC > 1:724012/1‑49 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC > 1:1612562/1‑49 CGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:1600878/1‑48 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTA < 1:1095482/49‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:1276929/48‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:573909/48‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:489746/1‑47 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:1177861/49‑1 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:585098/1‑49 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:1992725/1‑49 TGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:213373/1‑48 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:687488/48‑1 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG < 1:1026648/49‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC > 1:624456/1‑49 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC > 1:418699/1‑48 TGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA > 1:1132030/1‑48 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA < 1:866641/49‑1 GCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:1871609/1‑48 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAG < 1:1679333/49‑1 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:1071217/1‑45 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:836117/1‑48 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA < 1:1907091/47‑1 GAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCT < 1:87629/49‑1 AAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTG < 1:1097195/49‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT > 1:1535515/1‑49 TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687811‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT > NC_000913/689045‑689087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |