| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 29 [0] | [0] 31 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 29 (1.080) | 25/94 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388841‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT > NC_000913/1398623‑1398662 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:1475748/1‑49 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG < 1:1551849/49‑1 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:1021500/1‑49 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:565071/1‑49 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTC < 1:556157/47‑1 TTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:295407/1‑48 TTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:994709/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:926318/1‑48 ATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:276283/48‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:2068801/1‑49 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACA < 1:443475/49‑1 CTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:1983376/48‑1 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAA > 1:1432317/1‑49 AACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:1960583/1‑49 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:2073583/49‑1 CTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTG > 1:1234501/1‑49 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT < 1:1809884/47‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT < 1:151719/47‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT < 1:411962/47‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGC < 1:1487675/49‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:310301/1‑48 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:734657/1‑48 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:1551824/49‑1 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:1130522/49‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG > 1:206502/1‑48 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTA < 1:1866526/49‑1 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGT > 1:1464556/1‑48 AAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAA > 1:1186666/1‑49 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT < 1:321121/49‑1 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388841‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT > NC_000913/1398623‑1398662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |