| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 29 [0] | [0] 31 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 29 (1.080) | 25/94 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAA > NC_000913/1388841‑1388928 | cGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:1475748‑M1/1‑48 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagg < 1:1551849‑M1/49‑6 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagg > 1:1021500‑M1/1‑44 (MQ=255) gTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcct > 1:565071‑M1/1‑37 (MQ=255) gTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc < 1:556157‑M1/47‑11 (MQ=255) tttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcct > 1:295407‑M1/1‑36 (MQ=255) ttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta > 1:994709‑M1/1‑35 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta > 1:926318‑M1/1‑34 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttac < 1:276283‑M1/48‑16 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa > 1:2068801‑M1/1‑32 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaaca < 1:443475‑M1/49‑20 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac < 1:1983376‑M1/48‑19 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaa > 1:1432317‑M1/1‑29 (MQ=255) aaCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:1960583‑M1/1‑28 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact < 1:2073583‑M1/49‑23 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactg > 1:1234501‑M1/1‑26 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt < 1:1809884‑M1/47‑25 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt < 1:151719‑M1/47‑25 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt < 1:411962‑M1/47‑25 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc < 1:1487675‑M1/49‑31 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:310301‑M1/1‑19 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:734657‑M1/1‑19 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt < 1:1551824‑M1/49‑34 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt < 1:1130522‑M1/49‑34 (MQ=255) gCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttg > 1:206502‑M1/1‑12 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgta < 1:1866526‑M1/49‑39 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgt > 1:1464556‑M1/1‑11 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa > 1:1186666‑M1/1‑10 (MQ=255) aaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat < 1:321121‑M1/49‑41 (MQ=255) | CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAA > NC_000913/1388841‑1388928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |