| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 25 [1] | [0] 23 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.040) | 23 (0.840) | 20/96 | 0.1 | 97.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997068‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:1397188/48‑1CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCG > 1:146272/1‑49 GCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGT > 1:1122663/1‑48 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA < 1:1024701/49‑1 GAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGGAACG > 1:908501/1‑49 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGg > 1:1685558/1‑48 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTTGGTTCCGTAACGTT < 1:1173972/49‑1 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:944410/49‑1 TTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT > 1:2089385/1‑49 TTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTTTAT > 1:1976604/1‑49 TCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTTTAT > 1:1033964/1‑48 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:188309/47‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:195118/49‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC < 1:1355776/49‑1 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:981820/1‑48 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:1173945/47‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:1337988/49‑1 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:2036949/1‑48 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA > 1:78332/1‑48 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:1278527/49‑1 CGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:286286/1‑49 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:1373650/1‑48 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:605190/49‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997068‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |