| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 25 [1] | [0] 23 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.040) | 23 (0.840) | 20/96 | 0.1 | 97.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCT > NC_000913/1997063‑1997159 | tattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCgg > 1:1455748/1‑49 (MQ=255) tGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCCCgggtc > 1:1650724/1‑47 (MQ=38) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:1397188‑M1/48‑5 (MQ=255) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccg > 1:146272‑M1/1‑44 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgt > 1:1122663‑M1/1‑42 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaa < 1:1024701‑M1/49‑9 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccggaacg > 1:908501‑M1/1‑39 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgg > 1:1685558‑M1/1‑38 (MQ=255) aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTTGGttccgtaacgtt < 1:1173972‑M1/49‑13 (MQ=255) cTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttta < 1:944410‑M1/49‑15 (MQ=255) ttCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttat > 1:2089385‑M1/1‑34 (MQ=255) ttCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtttat > 1:1976604‑M1/1‑34 (MQ=255) tctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtttat > 1:1033964‑M1/1‑33 (MQ=255) ctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttat < 1:188309‑M1/47‑16 (MQ=255) ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 1:195118‑M1/49‑23 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatc < 1:1355776‑M1/49‑25 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:981820‑M1/1‑22 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatccta < 1:1173945‑M1/47‑28 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:1337988‑M1/49‑37 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:2036949‑M1/1‑11 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccga > 1:78332‑M1/1‑9 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:1278527‑M1/49‑45 (MQ=255) cGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:286286‑M1/1‑3 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa > 1:1373650‑M1/1‑2 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:605190‑M1/49‑49 (MQ=255) | TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCT > NC_000913/1997063‑1997159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |